Data Simulation & Basis Set Generation

This is a list of simulation software.

VDI

VDI (Visual Display Interface) is a collection of MATLAB libraries created to visualize and process multiresolution data, such as MRS, MRSI, fMRI and anatomical MRI. An additional sub-library called SpinTool (independently available for download) can be used to easily and quickly write Bloch simulations and simulations of J-coupled spins.

VDI
Developer Assaf Tal
Language MATLAB
License BSD3
Credit Please cite the software package using the APS style or equivalent (Tal, A (2020). Visual Display Interface (VDI) [Computer Software]. Retrieved from http://www.vdisoftware.net)

Author Website 

FID-A

The FID Appliance (FID-A) is an open-source software package for simulation of MRS experiments, design and analysis of radiofrequency (RF) pulses, and processing of MRS data.

FID-A
Developer Jamie Near
Language MATLAB
License open-source
Credit

Author Website  Publication

GAMMA/PyGamma

Classic NMR simulation library.

GAMMA/PyGamma
Developer Brian J. Soher
Language C++, Python
License open-source
Credit Proper reference should be given, using the citation below, when GAMMA simulations are used in papers and/or presentations: 'Computer Simulations in Magnetic Resonance. An Object Oriented Programming Approach', S.A. Smith, T.O. Levante, B.H. Meier, and R.R. Ernst, J. Magn. Reson., 106a.

Author Website  Publication

jMRUI

jMRUI is a software package for advanced time-domain analysis of magnetic resonance spectroscopy (MRS) and spectroscopic imaging (MRSI) data.

jMRUI
Developer MRUI consortium (http://www.jmrui.eu/about/coordinator-developers/)
Language Java
License Closed-source proprietary free for non-commercial use (http://www.jmrui.eu/license-and-download/jmrui-license/)
Credit

Author Website  Publication

MARSS

A novel software package for fast and computationally efficient basis set simulation.

MARSS
Developer Christoph Juchem, Karl Landheer
Language MATLAB
License Closed-source, limited-term academic license
Credit

Author Website  Publication

Spinach

Spinach is a fast (polynomial complexity scaling for liquid state NMR) open-source spin dynamics simulation library that supports NMR, EPR, MRI, DNP, MAS, Optimal Control, PHIP, singlet state NMR, and other forms of Magnetic Resonance spectroscopy.

Spinach
Developer Ilya Kuprov
Language MATLAB
License Open-source
Credit If you are using Spinach, cite appropriate papers from http://spindynamics.org/wiki/index.php?title=Appendix_C:_literature_citations

Author Website  Publication

Vespa

The free, open source Vespa suite contains four magnetic resonance (MR) spectroscopy software applications: RFPulse (for RF pulse design), Simulation (for spectral simulation), Priorset (for creating simulated MR spectroscopic data) and Analysis (for spectral data processing and analysis).

Vespa
Developer Brian J. Soher
Language Python
License BSD-3
Credit

Author Website